Use of a cd6 binding partner and method based thereon

ABSTRACT

The present disclosure relates to methods for treatment and prevention of disease conditions mediated by T-helper 17 (Th17) and/or T-helper 1 (Th1) T lymphocytes (T cells). In particular, the present disclosure relates to use of anti-CD6 antibody for treatment of disease conditions mediated by auto-reactive Th17 and Th1 T lymphocytes. The methods of the present disclosure further have utility in methods for modulating an immune response by suppressing production of the cytokine IL-23R, thereby decreasing inflammation mediated by Th17 cells.

CROSS-REFERENCE TO RELATED APPLICATIONS

The present application claims the benefit of and the priority toprovisional Indian patent application 3264/CHE/2013 filed on 23 Jul.2013 with the Indian Patent Office. The content of said applicationfiled on 23 Jul. 2013 is incorporated herein by reference for allpurposes in its entirety, including an incorporation of any element orpart of the description, claims or drawings not contained herein andreferred to in Rule 20.5(a) of the PCT, pursuant to Rule 4.18 of thePCT.

TECHNICAL FIELD

The present disclosure relates to a method and a use of a CD6 bindingpartner. In particular, the present disclosure relates to a method fortreatment, including prevention, of disease conditions mediated byT-helper 17 (Th17) and/or T-helper 1 (Th1) T lymphocytes (T cells).Furthermore, the present disclosure relates to the use of anti-CD6binding partner for treatment of disease conditions mediated byauto-reactive Th17 and Th1 T lymphocytes. The binding partners,compositions, methods and uses of the present disclosure further haveutility in methods and uses for modulating an immune response bysuppressing the production of the cytokine IL-23R (interleukin 23receptor), thereby decreasing inflammation mediated by Th17 cells.

BACKGROUND OF THE DISCLOSURE

The following discussion of the background of the disclosure is merelyprovided to aid the reader in understanding the binding partners,compositions, methods and uses described in this document, and is notadmitted to describe or constitute prior art.

Protective immunity against certain diseases is dependent on thedifferential induction of specific pro-inflammatory T-cell (Tlymphocyte) populations by antigen presenting cells (APCs) of the innateimmune system, such as dendritic cells (DCs) and macrophages. Two suchT-cell populations, responsible for mediating cellular immunity to awide range of pathogens, are Th1 and Th17 cells. Both Th 1 and morerecently Th17 T cell populations have been implicated as mediators ofautoimmune and chronic inflammatory diseases, and thus serve as relevantcellular targets for immunosuppressive agents. Furthermore, DendriticCells, as initiators of T-cell responses, are a second cellular targetfor therapies designed to combat inflammatory disease.

Multiple Sclerosis (MS) is an inflammatory autoimmune disorder of thecentral nervous system (CNS), characterized by inflammatory infiltratesof T-cells, B cells, macrophages and focal demyelinating plaques withinthe CNS. Both Th1 and Th17 cell-mediated responses have been shown toplay a role in the development of inflammatory demyelination.Myelin-reactive T-cells from MS patients produce cytokines consistentwith a Th1-mediated response, while microarray studies of MS lesionsfrom patients demonstrate increased expression of IL-23R.

A relevant model for studying the mechanisms of autoimmune inflammatoryresponses, and in particular MS, is the experimental autoimmuneencephalomyelitis (EAE) animal model of inflammatory demyelinatingdisease that shares clinical and neuropathological changes with multiplesclerosis (MS). It has been accepted for many years that EAE is largelya CD4+ Th1-mediated disease, though a pathogenic role for CD8+ T-cellsin the induction of EAE has also been demonstrated. More recentlyhowever, it has been demonstrated that an IL-17 producing T cell subsetplays a critical role in the pathogenesis of EAE. While there is stillsome debate in the literature, it is likely that Th1 and Th17 cellscooperate to induce the development of organ-specific autoimmunity.

CD6 is an important cell surface protein predominantly expressed byhuman T cells and a subset of B cells, as well as by some B cell chroniclymphocytic leukemias and neurons [Aruffo et al., J. Exp. Med. 1991,174:949; Kantoun et al., J. Immunol. 1981, 127:987; Mayer et al., J.Neuroimmunol. 1990. 29:193]. CD6 is a member of a large family ofproteins characterized by having at least one domain homologous to thescavenger receptor cysteine-rich domain (SRCR) of type I macrophages[Matsumoto, et al., J. Exp. Med. 1991, 173:55 and Resnick et al., TrendsBiochem. Sci. 1994, 19:5]. Other members of this family include CD5[Jones et al., Nature. 1986, 323:346]; cyclophilin C [Friedman et al.1993, PNAS 90:6815]; complement factor I, which binds activatedcomplement proteins C3b and C4b [Goldberger, et al., J. Biol. Chem.1987, 262:10065]; bovine WC-1 expressed by .tau./.delta. T cells[Wijingaard et al., J. Immunol. 1992, 149:3273] and M130 [Law et al.,Eur J. Immunol. 1993, 23:2320], a macrophage activation marker.

Blocking studies using anti-CD6 monoclonal antibodies (mAbs) suggestthat CD6 plays an important role in T cell development by regulating Tcell adhesive interactions with thymic epithelial (TE) cells (Patel etal., J. Exp. Med. (1995) 181:1563-1568). Additional studies have shownthat CD6 can function as an important accessory molecule in T cellactivation. For example, certain anti-CD6 mAb are directly mitogenic forT cells (Gangemi et al., J. Immunol. (1989) 143:2439; Bott et al., Int.Immunol. (1993) 7:783), whereas others are able to co-stimulate T cellproliferation in conjunction with anti-CD3, anti-CD2 or PMA (Gangemi etal., J. Immunol. (1989) 143:2439; Morimoto et al., J. Immunol. (1988)140:2165-2170; Osorio et al., Cell. Immunol. (1994) 154:23). Yetadditional evidence of the role of CD6 in T cell activation comes fromstudies showing that CD6 becomes hyperphosphorylated on Ser and Thrresidues (Swack et al., Mol. Immunol. (1989) 26:1037-1049; Swack et al.,J. Biol. Chem. (1991) 266:7137; Cardenas et al., J. Immunol.,145:1450-1455 (1990)) and phosphorylated on Tyr residues (Wee et al., J.Exp. Med. (1993) 177:219-223) following T cell activation. These andother studies implicate CD6 as an important modulator of both immatureand mature T cell function in vivo, affecting both T cell activation andsignal transduction (De Wit, J., et al., Blood (2011) 118:6107-6114).

BRIEF DESCRIPTION OF THE ACCOMPANYING FIGURES

In order that the disclosure may be readily understood and put intopractical effect, reference will now be made to exemplary embodiments asillustrated with reference to the accompanying Figures. The Figurestogether with the detailed description below, are incorporated in andform part of the specification, and serve to further illustrate theembodiments and explain various principles and advantages, in accordancewith the present disclosure:

FIG. 1 depicts inhibition of Th1 and Th17 cytokines by the humanizedmonoclonal antibody Itolizumab as compared to an isotype controlantibody, namely the humanized monoclonal antibody Nimotuzumab (“T1h”),in a mixed lymphocyte reaction assay.

FIG. 2: An anti-mouse CD6 domain 1 specific antibody (surrogate antibodyto Itolizumab) shows the inhibition of Th1 and Th17 cytokines.Splenocytes from EAE induced animals treated with anti-mouse CD6antibody, and a group treated with rat antibody were re-stimulated inculture with an anti CD3 antibody. The group treated with the ratantibody showed high proliferation with associated release of highamounts of Th1 and Th17 cytokines. On the other hand, the anti-mouse CD6treated group of animals showed decreased proliferation and lowerrelease of Th1 and Th17 specific cytokines in this mouse model of MS.

FIG. 3: CD6 overexpression in pro-inflammatory CD4⁺ T cell subsets:

(A) PBMCs were stimulated in Thnp (nonpolarizing for CD4+ T cells) orTh17pol (Th17-polarizing) conditions, supernatant was collected fromquadruplicate wells, pooled and analyzed using ELISA for secreted IFN-γ(Th1 signature cytokine) and IL-17 (Th17 signature cytokine). Ratio ofabsolute concentration of IFN-γ (empty triangle) or IL-17A (filledsquare) in Thl7pol and Thnp conditions (Th17pol: Thnp) is plotted acrossthe days of analysis. (B) Absolute levels of IFN-γ (empty bars) andIL-17 (shaded bars) on day 13 is compared between Thnp and Thl7polconditions. Data shown is mean±SD for triplicate ELISA wells (p<0.001)(C) PBMCs were left unstimulated or stimulated in Thnp or Th17polconditions. CD25 expression on CD4⁺T cells was analyzed on Day 3. (D)PBMCs were left unstimulated (shaded histogram) or stimulated in Thnp(solid line) or Th17pol (dotted line) conditions. CD6 expression (usingbiotin Itolizumab as detection reagent) was analyzed on Day 9 andplotted as CD6 overlay histograms gated on CD4⁺T cells. (E) Foldincrease in CD6 MFI on gated CD4⁺T cells was calculated overunstimulated, and plotted as bar graph for both Thnp (shaded bar) andTh17pol (empty bar) conditions using 3 different antibodies as CD6detection reagent i.e. MEM98, MT605 and Biotinylated Itolizumab. Datashown is mean±SD (p<0.05). In panel A-C, data are representative of 2independent experiments from different donors and in panel D&E data arerepresentative of 2 independent experiments from 6 different donors.

FIG. 4: Itolizumab Inhibits T cell activation and proliferation in bothThnp and Th17pol conditions:

(A) PBMCs were stimulated in Thnp or Th17pol conditions in presence ofItolizumab or control antibody. On day 3 cells were analyzed for CD25expression on gated CD4⁺T cells. % CD4⁺CD25⁺T cells in stimulated PBMCs,is plotted as bar graphs. Data shown is mean±SD from 2 independentexperiments from different donors. (B) PBMCs labelled with CFSE dye werestimulated in Thnp or Th17pol conditions in presence of Itolizumab orcontrol antibody. On day 3 cells were analyzed for CF SE dilution ongated CD4⁺T cells. Data shown is from 1 experiment.

FIG. 5: Itolizumab treatment causes substantial reduction in expressionof IL-17 and IFN-γ cytokines in cells stimulated in Th17 polarizingcondition:

PBMCs were stimulated in Th17pol conditions in presence of Itolizumab orcontrol antibody. On days 3, 6, 8 and 13, cells stimulated in Th17polconditions with control or Itolizumab monoclonal antibody, wererestimulated with PMA-Ionomycin for 5 hours and analyzed for expressionof intracellular cytokine IFN-γ and IL-17A. Representative flowcytometry dot plots (on gated CD3⁺T cells) on day 6 are shown in panelA. Panel B & C show the % of IFN-γ⁺T cells and IL-17A⁺T cellsrespectively, in presence of Itolizumab (empty triangle) or controlantibody (empty circle), across days as obtained from flow cytometryanalysis. Data is representative of 2 independent experiments fromdifferent donors. To analyze the basal level of secreted cytokines,supernatants were collected from quadruplicate wells of PBMCs stimulatedin Th17pol conditions in presence of Itolizumab (empty triangle) orcontrol antibody (empty circle). As evaluated by ELISA, secreted (D)IFN-γ and (E) IL-17 levels are plotted across days. In Panel D and Edata is shown as mean±SD (p<0.0001) and representative of 2 independentexperiments from different donors.

FIG. 6: Itolizumab causes reduction in signature Th17 specific markers:

(A) PBMCs were stimulated in Th17pol conditions in presence of controlor Itolizumab antibody and analyzed on Day 3 for expression oftranscription factor pSTAT3. Data shown is histogram for pSTAT3 on gatedCD4⁺T cells. (B) Cells stimulated in Th17pol conditions in presence ofcontrol or Itolizumab antibody were restimulated with PMA-Ionomycin for5 hours and analyzed for expression of intracellular cytokine IL-17A andTh17 signature transcription factor RORγT. Day 6 representative dotplots of RORγT and IL-17A on gated CD3⁺T cells are shown. (C) Data frompanel B was plotted as histogram overlays of RORγT MFI on gated CD3⁺Tcells stimulated in Th17pol conditions in presence of control (emptyhistogram) or Itolizumab (dotted line histogram) antibodies. Data shownis representative of 2 independent similar experiments from differentdonors. (D) For the experiment as explained in panel A, Day 6representative dot plots of CCR6 and IL-17A on gated CD3⁺CCR6⁺T cellsare shown.

SUMMARY OF THE DISCLOSURE

Disclosed herein are methods, uses and compositions directed attreating, including preventing, an autoimmune disease in a subject, aswell as treating, including preventing, allograft rejection, andtreating, including preventing, graft-versus-host disease. A respectivemethod and use includes administering to the subject a therapeuticallyeffective amount of a binding partner specifically binding to CD6.

The present disclosure relates to methods for treatment, includingprevention, of disease conditions mediated by T-helper 17 (Th17) and/orT-helper 1 (Th1) T lymphocytes (T cells). In particular, the presentdisclosure relates to the use of an anti-CD6 antibody for the treatmentof disease conditions mediated by auto-reactive Th17 and Th1 Tlymphocytes. The methods of the disclosure further have utility inmethods for modulating an immune response by suppressing the productionof the cytokine IL-23R, thereby decreasing inflammation mediated by Th17cells.

In a first aspect there is provided a method of treating a subjectsuffering from (i) an autoimmune disease characterized by an increasednumber of T helper 17 (Th17) T lymphocytes, (ii) allograft rejection, or(iii) graft-versus-host disease. Thus the subject is known or suspectedto have an increased number of T helper 17 (Th17) T lymphocytes whencompared to a healthy subject. The method includes administering to thesubject a binding partner specifically binding to CD6.

In a second aspect there is provided a binding partner specificallybinding to CD6 for use in the treatment of (i) an autoimmune disease,(ii) allograft rejection, or (iii) graft-versus-host disease in asubject. The subject is known or suspected to have an increased numberof T helper 17 (Th17) T lymphocytes when compared to a healthy subject.These Th17 T lymphocytes may be auto-reactive Th17 T lymphocytes.

In some embodiments of the method according to the first aspect or ofthe binding partner specifically binding to CD6 for use according to thesecond aspect the subject is furthermore known or suspected to have anincreased number of T helper 1 (Th1) cells when compared to a healthysubject. These Th1 T lymphocytes may be auto-reactive Th1 T lymphocytes.

In some embodiments of the method according to the first aspect or ofthe binding partner specifically binding to CD6 for use according to thesecond aspect the subject the autoimmune disease is rheumatoidarthritis. In some embodiments the autoimmune disease is InflammatoryBowel Disease. The autoimmune disease may for example be Crohn'sdisease. In some embodiments the autoimmune disease is ulcerativecolitis. The autoimmune disease is in some embodiments psoriasis. Insome embodiments the autoimmune disease is Sjogren's syndrome. In someembodiments the autoimmune disease is Ankylosing spondylitis. In someembodiments the autoimmune disease is Type I diabetes.

In some embodiments of the method according to the first aspect or ofthe binding partner specifically binding to CD6 for use according to thesecond aspect the subject the binding partner is an antibody such as animmunoglobulin. The antibody may for example be a polyclonalimmunoglobulin. In some embodiments the antibody is a monoclonalantibody. In some embodiments the antibody is a fully non-humanantibody. In some embodiments the antibody is a chimeric antibody. Theantibody is in some embodiments a humanized antibody. In someembodiments the antibody is a fully human antibody such as a fully humanimmunoglobulin. An illustrative example of a humanized antibody isItolizumab.

In some embodiments of the method according to the first aspect or ofthe binding partner specifically binding to CD6 for use according to thesecond aspect the subject the binding partner is a functional fragmentof an immunoglobulin. In some embodiments a respective functionalimmunoglobulin fragment is a Fab-fragment. In some embodiments thefunctional immunoglobulin fragment is a single-chain variable fragment(scFv). In some embodiments the functional immunoglobulin fragment is ananobody.

In some embodiments the binding partner specifically binding to CD6 isincluded in a pharmaceutical composition. The pharmaceutical compositionincludes the binding partner specifically binding to CD6 and at leastone pharmaceutically acceptable diluent, carrier or excipient.

In a third aspect there is provided a method of treating a subjectsuffering from (i) an autoimmune disease characterized by an increasednumber of T helper 17 (Th17) T lymphocytes, (ii) allograft rejection, or(iii) graft-versus-host disease. Thus the subject is known or suspectedto have an increased number of T helper 17 (Th17) T lymphocytes whencompared to a healthy subject. The method includes administering to thesubject a binding partner specifically binding to CD6 and a bindingpartner specifically binding to CD3. In some embodiments the bindingpartner specifically binding to CD6 and the binding partner specificallybinding to CD3 are administered independent from one another. In someembodiments the binding partner specifically binding to CD6 and thebinding partner specifically binding to CD3 are administeredconcomitantly.

In a fourth aspect there is provided a combination of a binding partnerspecifically binding to CD6 and a binding partner specifically bindingto CD3 for use in the treatment of (i) an autoimmune disease, (ii)allograft rejection, or (iii) graft-versus-host disease in a subject.The subject is known or suspected to have an increased number of Thelper 17 (Th17) T lymphocytes when compared to a healthy subject. TheseTh17 T lymphocytes may be auto-reactive Th17 T lymphocytes.

In a fifth aspect there is provided a pharmaceutical composition for thetreatment of an autoimmune disease in a subject known or suspected tohave an increased number of Th17 cells when compared to a healthysubject. The pharmaceutical composition includes a binding partnerspecifically binding to CD6 and at least one pharmaceutically acceptablediluent, carrier or excipient.

In a sixth aspect there is provided a pharmaceutical composition for thetreatment of an autoimmune disease in a subject known or suspected tohave an increased number of Th17 cells when compared to a healthysubject. The pharmaceutical composition includes a binding partnerspecifically binding to CD6. The pharmaceutical composition alsoincludes a binding partner specifically binding to CD3. Furthermore thepharmaceutical composition includes at least one pharmaceuticallyacceptable diluent, carrier or excipient.

DETAILED DESCRIPTION OF THE DISCLOSURE Definitions

Unless otherwise stated, the following terms used in this document,including the description and claims, have the definitions given below.

The word “about” as used herein refers to a value being within anacceptable error range for the particular value as determined by one ofordinary skill in the art, which will depend in part on how the value ismeasured or determined, i.e., the limitations of the measurement system.For example, “about” can mean within 1 or more than 1 standarddeviation, per the practice in the art. The term “about” is also used toindicate that the amount or value in question may be the valuedesignated or some other value that is approximately the same. Thephrase is intended to convey that similar values promote equivalentresults or effects according to the binding partners, compositions,methods and uses described herein. In this context “about” may refer toa range above and/or below of up to 10%. The word “about” refers in someembodiments to a range above and below a certain value that is up to 5%,such as up to up to 2%, up to 1%, or up to 0.5% above or below thatvalue. In one embodiment “about” refers to a range up to 0.1% above andbelow a given value.

The term “administering”, as used herein, refers to any mode oftransferring, delivering, introducing, or transporting matter such as acompound, e.g. a pharmaceutical compound, or other agent such as anantigen, to a subject. Modes of administration include oraladministration, topical contact, intravenous, intraperitoneal,intramuscular, intranasal, or subcutaneous administration (cf. below).Administration “in combination with” further matter such as one or moretherapeutic agents includes simultaneous (concurrent) and consecutiveadministration in any order.

The term “antibody” generally refers to an immunoglobulin, a fragmentthereof or a proteinaceous binding molecule with immunoglobulin-likefunctions (cf. below).

The term “binding partner” as used herein refers to matter, such as amolecule, in particular a polymeric molecule, that can bind a nucleicacid molecule such as a DNA or an RNA molecule, including an mRNAmolecule, as well as a peptide, a protein, a saccharide, apolysaccharide or a lipid through an interaction that is sufficient topermit the agent to form a complex with the nucleic acid molecule,peptide, protein or saccharide, a polysaccharide or a lipid, generallyvia non-covalent bonding. In some embodiments the binding partner is aPNA molecule. In some embodiments the binding partner is animmunoglobulin or a proteinaceous binding molecule withimmunoglobulin-like functions as defined below. In some embodiments thebinding partner is an aptamer. In some embodiments a binding partner isspecific for a particular target. In some embodiments a binding partnerincludes a plurality of binding sites, each binding site being specificfor a particular target. As an illustrative example, a binding partnermay be a proteinaceous agent with immunoglobulin-like functions with twobinding sites. It may for instance be a bispecific diabody, such as abispecific single chain diabody.

As used herein, the term “chimeric antibody” refers to an immunoglobulinpolypeptide or domain antibody that includes sequences from more thanone species. In a chimeric antibody a heavy chain or a light chain maycontain a variable region sequence from one species such as human and aconstant region sequence from another species such as mouse. As anexample, a “chimeric antibody” may be an immunoglobulin that hasvariable regions derived from an animal antibody, such as a rat or mouseantibody, fused to another molecule, for example, the constant domainsderived from a human antibody. The term “chimeric antibody” is intendedto encompass antibodies in which: (i) the heavy chain is chimeric butthe light chain comprises V and C regions from only one species; (ii)the light chain is chimeric but the heavy chain comprises V and Cregions from only one species; and (iii) both the heavy chain and thelight chain are chimeric.

In this regard, a “humanized antibody” as used herein is animmunoglobulin polypeptide or domain antibody containing structuralelements of a human antibody and the antigen binding site of a non-humanantibody. “Humanized antibodies” contain a minimal number of residuesfrom the non-human antibody. For instance, they may contain only the CDRregions of the non-human antibody, or only those residues that make upthe hypervariable regions of the non-human antibody. They may alsocontain certain residues from outside the variable regions of thenon-human polypeptide, such as residues that are necessary to mimic thestructure of the non-human antibody or to minimize steric interference.Typically a humanized antibody contains a human framework, at least oneCDR from a non-human antibody, with any constant region present beingsubstantially identical to a human immunoglobulin constant region, i.e.,at least about 85-90%, such as at least 95% identical. Hence, all partsof a humanized immunoglobulin, except possibly the CDRs, aresubstantially identical to corresponding parts of one or more nativehuman immunoglobulin sequences. In addition, humanized antibodies maycontain residues that do not correspond to either the human or thenon-human antibodies.

The term “detect” or “detecting”, as well as the term “determine” or“determining” when used in the context of a biomarker, refers to anymethod that can be used to detect the presence of a nucleic acid (DNAand RNA) or a protein/polypeptide. When used herein in combination withthe words “level”, “amount” or “value”, the words “detect”, “detecting”,“determine” or “determining” are understood to generally refer to aquantitative or a qualitative level. Accordingly, a method or use asdisclosed herein may include a quantification of Th17 cells in absolutenumbers. A method or use as disclosed herein may also include acomparison by measuring a relative amount of Th17 cells, for examplecompared to a reference sample from one or more healthy subjects. As afurther example, absolute amounts of IL-17A or TNFc may in someembodiments be measured. In some embodiments it may be analysed whethera first sample contains a higher or a lower or the same amount of IL-17Aor TNFα than a second sample. The terms “value,” “amount” and “level”also refer to the rate of synthesis of for example IL-17A, TNFa, IL-22,IL-17F, IL-21, or IL-6. The exact nature of the “level”, “amount” or“value” depends on the specific design and components of the particularanalytical method employed to detect T cells or e.g. IL-17A, TNFα,IL-22, IL-17F, IL-21, or IL-6.

An “effective amount” or a “therapeutically effective amount” of anagent such as a binding partner, is an amount—either as a single dose oras part of a series of doses—sufficient to provide a therapeutic benefitin the treatment or management of the relevant pathological condition,or to delay or minimize one or more symptoms associated with thepresence of the condition. Such a condition may be associated withimmunosuppression, e.g. an autoimmune disease.

The terms “expressing” and “expression” in reference to a biomarker areintended to be understood in the ordinary meaning as used in the art. Abiomarker is expressed by a cell via transcription of a nucleic acidinto mRNA, followed by translation into a polypeptide, which is foldedand possibly further processed. The biomarkers discussed in thisdisclosure are in addition being transported to the surface of therespective cell. Hence, the statement that a cell is expressing such abiomarker indicates that the biomarker is found on the surface of thecell and implies that the biomarker has been synthesized by theexpression machinery of the respective cell. Accordingly, the term“expression level” in the context of a cell population such as T cellsrefers to the number or percentage of cells that have the biomarker ofinterest on their cell surface. The determination of expression may bebased on the normalized expression level of the biomarkers. Expressionlevels are normalized by correcting the absolute expression level of abiomarker by comparing its expression to the expression of a gene thatis not a biomarker in the context of the invention. The expression levelmay also be provided as a relative expression level.

With regard to the respective biological process itself, the terms“expression”, “gene expression” or “expressing” refer to the entirety ofregulatory pathways converting the information encoded in the nucleicacid sequence of a gene first into messenger RNA (mRNA) and then to aprotein. Accordingly, the expression of a gene includes itstranscription into a primary hnRNA, the processing of this hnRNA into amature RNA and the translation of the mRNA sequence into thecorresponding amino acid sequence of the protein. In this context, it isalso noted that the term “gene product” refers not only to a protein,including e.g. a final protein (including a splice variant thereof)encoded by that gene and a respective precursor protein whereapplicable, but also to the respective mRNA, which may be regarded asthe “first gene product” during the course of gene expression.

By “fragment” in reference to a polypeptide such as an immunoglobulin ora proteinaceous binding molecule is meant any amino acid sequencepresent in a corresponding polypeptide, as long as it is shorter thanthe full length sequence and as long as it is capable of performing thefunction of interest of the protein in the case of an immunoglobulinspecifically binding to the desired target, e.g. antigen (CD6, forexample). The term “immunoglobulin fragment” refers to a portion of animmunoglobulin, often the hypervariable region and portions of thesurrounding heavy and light chains that displays specific bindingaffinity for a particular molecule. A hypervariable region is a portionof an immunoglobulin that physically binds to the polypeptide target.Due to the usage in the art, the terms “antibody fragment” and“immunoglobulin fragment” are used interchangeably herein.

A “functional fragment” as used herein, refers to a fragment of amolecule such as a peptide or a nucleic acid molecule, which retains atleast one biological activity of the full length molecule. In thecontext of an immunoglobulin a functional fragment is an immunologicallyfunctional fragment. Typically a functional fragment of a peptide iscapable of performing substantially the same functions as those of theintact polypeptide.

As used in this document, the expression “pharmaceutically acceptable”refers to those active compounds, materials, compositions, carriers,and/or dosage forms which are, within the scope of sound medicaljudgment, suitable for use in contact with the tissues of human beingsand animals without excessive toxicity, irritation, allergic response,or other problems or complications, commensurate with a reasonablebenefit/risk ratio.

The terms “polypeptide” and “protein” refer to a polymer of amino acidresidues and are not limited to a certain minimum length of the product.Where both terms are used concurrently, this twofold naming accounts forthe use of both terms side by side in the art.

The term “preventing” in the medical/physiological context, i.e. in thecontext of a physiological state, refers to decreasing the probabilitythat an organism contracts or develops an abnormal condition.

The term “specific” as used in this document is understood to indicatethat a binding partner is directed against, binds to, or reacts with abiomarker disclosed in the present application, such as CD6. Thus, beingdirected to, binding to or reacting with includes that the bindingpartner specifically binds to e.g. CD6. The term “specifically” in thiscontext means that the binding partner reacts with CD6, as applicable,or/and a portion thereof, but at least essentially not with anotherprotein. The term “another protein” includes any protein, includingproteins closely related to or being homologous to e.g. CD6 againstwhich the binding partner is directed to. The term “does not essentiallybind” means that the binding partner does not have particular affinityto another protein, i.e., shows a cross-reactivity of less than about30%, when compared to the affinity to CD6. In some embodiments thebinding partner shows a cross-reactivity of less than about 20%, such asless than about 10%. In some embodiments the binding partner shows across-reactivity reactivity of less than about 9, 8, or 7%, whencompared to the affinity to CD6. In some embodiments the binding partnershows a cross-reactivity of less than about 6%, such as less than about5%, when compared to the affinity to e.g. CD6. Whether the bindingpartner specifically reacts as defined herein above can easily betested, inter alia, by comparing the reaction of a respective bindingpartner with e.g. CD6, as applicable, and the reaction of the bindingpartner with (an) other protein(s). The term “specifically recognizing”,which can be used interchangeably with the terms “directed to” or“reacting with” means in the context of the present disclosure that aparticular molecule, generally an immunoglobulin, an immunoglobulinfragment or a proteinaceous binding molecule with immunoglobulin-likefunctions is capable of specifically interacting with and/or binding toat least two, including at least three, such as at least four or evenmore amino acids of an epitope as defined herein. Generally theimmunoglobulin or proteinaceous binding molecule can thereby form acomplex with the respective epitope of e.g. CD6. Such binding may beexemplified by the specificity of a “lock-and-key-principle”. “Specificbinding” can also be determined, for example, in accordance with aWestern blot, ELISA-, RIA-, ECL-, IRMA-test, FACS, IHC and a peptidescan.

The term “Surrogate antibody” as used herein is understood to indicatethe surrogate antibody to Itolizumab that was developed in-house tostudy the effects of an Anti CD6 domain 1 binding antibody in mice andis identified as a rat anti mouse CD6 IgG 2c. It has the equivalentproperties to Itolizumab as 1. Binds to domain 1 of mouse CD6, 2. Doesnot compete with ALCAM binding. 3. Inhibits the proliferation of nave Tcells from splenocytes stimulated with anti CD3. 4. Is not systemicallydepleting in mice. 5. Has a comparable affinity to that of T1h.

The term “subject” as used herein, also addressed as an individual,refers to a human or non-human animal, generally a mammal. A subject maybe a mammalian species such as a rabbit, a mouse, a rat, a Guinea pig, ahamster, a dog, a cat, a pig, a cow, a goat, a sheep, a horse, a monkey,an ape or a human. Thus, the methods, uses and compositions described inthis document are applicable to both human and veterinary disease. Thesample has been obtained from the subject. Where the same is a bodyfluid sample or a biopsy sample, it may be obtained using conventionaltechniques routinely employed in the art. It is thus understood thatconclusions drawn from expression levels in the sample and decisionsbased thereon concern the subject from whom/which the sample has beentaken. Where the subject is a living human who is receiving medical carefor a disease or condition, it is also addressed as a “patient”.

The terms “treatment” and “treating” as used herein, refer to aprophylactic or preventative measure having a therapeutic effect andpreventing, slowing down (lessen), or at least partially alleviating orabrogating an abnormal, including pathologic, condition in the organismof a subject. Those in need of treatment include those already with thedisorder as well as those prone to having the disorder or those in whomthe disorder is to be prevented (prophylaxis). Generally a treatmentreduces, stabilizes, or inhibits progression of a symptom that isassociated with the presence and/or progression of a disease orpathological condition. The term “administering” relates to a method ofincorporating a compound into cells or tissues of a subject. The term“therapeutic effect” refers to the inhibition or activation of factorscausing or contributing to the abnormal condition. A therapeutic effectrelieves to some extent one or more of the symptoms of an abnormalcondition or disease. The term “abnormal condition” refers to a functionin the cells or tissues of an organism that deviates from their normalfunctions in that organism. An abnormal condition can inter alia relateto cell proliferation, cell differentiation, or cell survival.

The terms “comprising”, “including,” containing”, “having” etc. shall beread expansively or open-ended and without limitation. Singular formssuch as “a”, “an” or “the” include plural references unless the contextclearly indicates otherwise. Thus, for example, reference to a “vector”includes a single vector as well as a plurality of vectors, either thesame—e.g. the same operon—or different. Likewise reference to “cell”includes a single cell as well as a plurality of cells. Unless otherwiseindicated, the term “at least” preceding a series of elements is to beunderstood to refer to every element in the series. The terms “at leastone” and “at least one of” include for example, one, two, three, four,or five or more elements. It is furthermore understood that slightvariations above and below a stated range can be used to achievesubstantially the same results as a value within the range. Also, unlessindicated otherwise, the disclosure of ranges is intended as acontinuous range including every value between the minimum and maximumvalues.

The scope and meaning of any use of a term will be apparent from thespecific context in which the term is used. Certain further definitionsfor selected terms used throughout this document are given in theappropriate context of the detailed description, as applicable. Unlessotherwise defined, all other scientific and technical terms used in thedescription, figures and claims have their ordinary meaning as commonlyunderstood by one of ordinary skill in the art.

Methods and Uses for Treating a Disease

The present inventors made the surprising finding that anti CD6 antibodymediated co-stimulation with an anti-CD3 antibody is of highsignificance, and apparently more significant as compared to theco-stimulation induced by anti CD28/CD3, which primes naive T cells forstable Th17 development by promoting the expression of IL-23R. Thus, theanti-CD6 antibody has immunosuppressive activity and acts to selectivelysuppress Th1 and Th17 (IL-23R producing T cell) mediated inflammatoryautoimmune disease.

Without wishing to be bound by theory, the inventors predict that IL-23Ris expressed by antigen presenting cells, such as dendritic cells andmacrophages. The expression of IL-23R by the antigen presenting cellsskews the resulting T cell response away from the expansion of T cellswith a Th1 and Th17 phenotype which can in some instances becomeauto-reactive T cells which mediate autoimmune and chronic inflammatoryconditions.

The current therapies for the treatment of autoimmune and chronicinflammatory diseases, such as multiple sclerosis, are mainly focused onthe use of steroids and other NSAIDs, which are non-specific and haveserious side effects. In particular, certain such treatments primarilyact to suppress the expression or functional activity of Tumor necrosisfactor alpha (TNF-alpha). For example, the chimeric monoclonal antibodyINFLIXIMAB (Remicade®) targets TNF-alpha function. Although effective incertain patients, such anti-TNF-alpha treatments can be ineffective whentreating certain patients, or certain autoimmune conditions, or further,could also result in the occurrence of undesirable side effects.

The inventors have identified the utility of a binding partner orcomposition of the present disclosure in the treatment of Th1 and/or Th17-mediated diseases and conditions, in particular autoimmune orimmune-mediated conditions, which occur where aberrant Th1 and/or Th17responses occur due to the occurrence of auto-reactive Th1 and/or Th17 Tcells.

A subject to be treated according to the present disclosure is known orsuspected to have an increased number of Th17 T cells when compared to ahealthy subject. Th17 T cells were named after their production of thesignature cytokine IL-17A. In addition Th17 T cells also produce IL-17F,IL-21, GM-CSF, TNFα and IL-6.

The presence of an increased number of Th17 T cells in a subject may bedetected by analyzing the T cells present in body fluid in a subject orbody fluid obtained from a subject.

The presence of an increased number of Th17 T cells in a subject may bedetected by analyzing the level of cytokines known to be produced byTh17 T cells. Accordingly in some embodiments an increased number ofTh17 T cells in a subject may be detected by detecting the level ofIL-17A in the subject and comparing the level to the level of IL-17A ina healthy subject. In some embodiments an increased number of Th17 Tcells in a subject may be detected by detecting the level of TNFα in thesubject and comparing the level to the level of TNFα in a healthysubject. In some embodiments an increased number of Th17 T cells in asubject may be detected by detecting the level of IL-6 in the subjectand comparing the level to the level of TNFα in a healthy subject. Insome embodiments an increased number of Th17 T cells in a subject may bedetected by detecting the level of Interferon gamma (IFN-γ) in thesubject and comparing the level to the level of Interferon gamma in ahealthy subject.

A binding partner disclosed herein specifically binds to CD6. “CD6” isan abbreviation of “Cluster of Differentiation 6”. The protein is alsocalled T-cell differentiation antigen CD6, as well as T12 or TP120. CD6is in some embodiments the mouse protein of SwissProt/UniProt accessionno. Q61003 (version 117 of 9 Jul. 2014). In some embodiments CD6 is thehuman protein with the SwissProt/UniProt accession no. P30203 (version125 of 9 Jul. 2014). In some embodiments CD6 is isoform d of the humanprotein CD6, having SwissProt/UniProt accession no. Q8WWJ4 (version 59of 16 Apr. 2014). In some embodiments CD6 is isoform c of the humanprotein CD6, having SwissProt/UniProt accession no. Q8WWJ6 (version 59of 16 Apr. 2014). In some embodiments CD6 is isoform b of the humanprotein CD6, having SwissProt/UniProt accession no. Q8WWJ3 (version 59of 16 Apr. 2014). In some embodiments CD6 is isoform e of the humanprotein CD6, having SwissProt/UniProt accession no. Q8WWJ7 (version 60of 16 Apr. 2014). In some embodiments CD6 is the human protein ofSwissProt/UniProt accession no. Q8N4Q7 (version 66 of 16 Apr. 2014). Insome embodiments CD6 is isoform CRA_d of the human protein CD6, havingSwissProt/UniProt accession no. G5E973 (version 26 of 9 Jul. 2014). Insome embodiments CD6 is the rat protein with the SwissProt/UniProtaccession no. Q5FVU4 (version 69 of 9 Jul. 2014). In some embodimentsCD6 is the Rhesus macaque (Macaca mulatta) protein with theSwissProt/UniProt accession no. H9ZFC2 (version 7 of 16 Apr. 2014).

In some embodiments of a method or use disclosed herein, IL-23Rexpression on blood cells and/or dendritic cells of the subject is beinganalysed. In some embodiments the level of one or more of TNF-alpha,IFN-gamma, IL-17, and IL-17A in a body fluid of the patient is beinganalysed. In a mixed lymphocyte reaction, it is observed that the Th1and Th17 cytokine IL17A is reduced in presence of T1 h as illustrated inFIG. 1. In animal models using surrogate antibody to domain 1 of CD6,reduction in Th1 and Th17 (IL17A) cytokines is observed as illustratedin FIG. 2.

Any available method can be used to detect the presence of a nucleicacid or a protein in the context of the present invention. Such a methodmay include established standard procedures well known in the art.Examples of such techniques include, but are not limited to, RT-PCR,RNAse protection assay, Northern analysis, Western analysis, ELISA,radioimmunoassay or fluorescence titration assay. Assessing the amountof a biomarker such as IL-17, IFN-gamma or TNF-alpha in/on a cell mayinclude assessing the amount of a nucleic acid, e.g. RNA, in a cellencoding the respective biomarker. A nucleic acid probe may be used toprobe a sample by any common hybridization method to detect the amountof nucleic acid molecules of the biomarker. In order to obtain nucleicacid probes chemical synthesis can be carried out. The synthesizednucleic acid probes may be first used as primers in a polymerase chainreaction (PCR) carried out in accordance with recognized PCR techniques,essentially according to standard PCR protocols utilizing theappropriate template, in order to obtain the respective probe. Oneskilled in the art will readily be able to design such a probe based onthe sequences available for the biomarker. The hybridization probe canbe labeled by standard labeling techniques such as with a radiolabel,enzyme label, fluorescent label, biotin-avidin label, chemiluminescenceor a nanoparticle. After hybridization, the probes may be visualizedusing a standard technique.

A detection method used in the context of the present invention mayinclude an amplification of the signal caused by the nucleic acid orprotein, such as a polymerase chain reaction (PCR) or the use of thebiotin-streptavidin system, for example in form of a conjugation to animmunoglobulin, as also explained in more detail below. The detectionmethod may for example include the use of an antibody, e.g. animmunoglobulin, which may be linked to an attached label, such as forinstance in Western analysis or ELISA. Where desired, an intracellularimmunoglobulin may be used for detection. Some or all of the steps ofdetection may be part of an automated detection system. Illustrativeexamples of such systems are automated real-time PCR platforms,automated nucleic acid isolation platforms, PCR product analysers andreal-time detection systems. As indicated above, the term “antibody” asused herein, is understood to include an immunoglobulin and animmunoglobulin fragment that is capable of specifically binding aselected protein, e.g. L-selectin or a protein specific for T cells, aswell as a respective proteinaceous binding molecule withimmunoglobulin-like functions. An antibody may for instance be anEGF-like domain, a Kringle-domain, a fibronectin type I domain, afibronectin type II domain, a fibronectin type III domain, a PAN domain,a Gla domain, a SRCR domain, a Kunitz/Bovine pancreatic trypsinInhibitor domain, tendamistat, a Kazal-type serine protease inhibitordomain, a Trefoil (P-type) domain, a von Willebrand factor type Cdomain, an Anaphylatoxin-like domain, a CUB domain, a thyroglobulin typeI repeat, an LDL-receptor class A domain, a Sushi domain, a Link domain,a Thrombospondin type I domain, an immunoglobulin domain or a animmunoglobulin-like domain (for example a domain antibody or a camelheavy chain antibody), a C-type lectin domain, a MAM domain, a vonWillebrand factor type A domain, a Somatomedin B domain, a WAP-type fourdisulfide core domain, a F5/8 type C domain, a Hemopexin domain, an SH2domain, an SH3 domain, a Laminin-type EGF-like domain, a C2 domain, a“Kappabody” (Ill. et al., Protein Eng (1997) 10, 949-957), a “Minibody”(Martin et al., EMBO J (1994) 13, 5303-5309), a “Diabody” (Holliger etal., PNAS U.S.A. 90, 6444-6448 (1993)), a “Janusin” (Traunecker et al.,EMBO J (1991) 10, 3655-3659 or Traunecker et al., Int J Cancer (1992)Suppl 7, 51-52), a nanobody, an adnectin, a tetranectin, a microbody, anaffilin, an affibody or an ankyrin, a crystallin, a knottin, ubiquitin,a zinc-finger protein, an autofluorescent protein, an ankyrin or ankyrinrepeat protein or a leucine-rich repeat protein (cf. also below).

A measurement of a level or amount may for instance rely onspectroscopic, photochemical, photometric, fluorometric, radiological,enzymatic or thermodynamic means. An example of a spectroscopicaldetection method is fluorescence correlation spectroscopy. Aphotochemical method is for instance photochemical cross-linking. Theuse of photoactive, fluorescent, radioactive or enzymatic labelsrespectively are examples for photometric, fluorometric, radiologicaland enzymatic detection methods. An example of a thermodynamic detectionmethod is isothermal titration calorimetry. As an illustrative exampleof a label, a detailed protocol on the use of water-soluble,bio-functionalized semiconductor quantum dots has been given by Lidke etal. (Current Protocols in Cell Biology, [2007] Suppl. 36,25.1.1-25.1.18). Such quantum dots have a particularly highphotostability, allowing monitoring their localization for minutes tohours to days. They are typically fluorescent nanoparticles. Sincedifferent types of quantum dots can be excited by a single laser linemulti-colour labelling can be performed. Detection can for exampleconveniently be carried out in different fluorescence channels of a flowcytometer. A quantum dot can be coupled to a binding partner of IL-17,IFN-gamma or TNF-alpha.

The measurement used is generally selected to be of a sensitivity thatallows detection of the cells expressing the biomarker of interest, e.gIL-17, IFN-gamma or TNF-alpha, in the range of a selected thresholdvalue, in particular of a sensitivity that allows determining whetherIL-17, IFN-gamma or TNF-alpha expressing cells are below the thresholdvalue. Typically a binding partner of IL-17, IFN-gamma or TNF-alpha,respectively, may be used in combination with a detectable marker. Sucha binding partner of IL-17, IFN-gamma or TNF-alpha has a detectableaffinity and specificity for IL-17, IFN-gamma or TNF-alpha,respectively. Typically, binding is considered specific when the bindingaffinity is higher than 10-6 M. A binding partner of e.g. IL-17,IFN-gamma, TNF-alpha, or IL-23R, respectively, has in some embodimentsan affinity of about 10⁻⁸ M or higher, or of about 10⁻⁹ M or higher.

A respective binding partner of e.g. IL-17, IFN-gamma, TNF-alpha, orIL-23R, as well as a binding partner for another selectedcell-characteristic protein, may be an immunoglobulin, a fragmentthereof or a proteinaceous binding molecule with immunoglobulin-likefunctions. An antibody fragment generally contains an antigen binding orvariable region. Examples of (recombinant) antibody fragments areimmunoglobulin fragments such as Fab fragments, Fab′ fragments, Fvfragments, single-chain Fv fragments (scFv), diabodies or domainantibodies (Holt, L. J., et al., Trends Biotechnol. (2003), 21, 11,484-490). An example of a proteinaceous binding molecule withimmunoglobulin-like functions is a mutein based on a polypeptide of thelipocalin family (WO 03/029462, Beste et al., Proc. Natl. Acad. Sci. USA(1999) 96, 1898-1903). Lipocalins, such as the bilin binding protein,the human neutrophil gelatinase-associated lipocalin, humanApolipoprotein D or glycodelin, posses natural ligand-binding sites thatcan be modified so that they bind to selected small protein regionsknown as haptens. Examples of other proteinaceous binding molecules arethe so-called glubodies (see e.g. international patent application WO96/23879 or Napolitano, E. W., et al., Chemistry & Biology (1996) 3, 5,359-367), proteins based on the ankyrin scaffold (Mosavi, L. K., et al.,Protein Science (2004) 13, 6, 1435-1448) or crystalline scaffold (e.g.internation patent application WO 01/04144), the proteins described inSkerra, J. Mol. Recognit. (2000) 13, 167-187, AdNectins, tetranectinsand avimers. Avimers contain so called A-domains that occur as stringsof multiple domains in several cell surface receptors (Silverman, J., etal., Nature Biotechnology (2005) 23, 1556-1561). Adnectins, derived froma domain of human fibronectin, contain three loops that can beengineered for immunoglobulin-like binding to targets (Gill, D. S. &Damle, N. K., Current Opinion in Biotechnology (2006) 17, 653-658).Tetranectins, derived from the respective human homotrimeric protein,likewise contain loop regions in a C-type lectin domain that can beengineered for desired binding (ibid.). Peptoids, which can act asprotein ligands, are oligo(N-alkyl) glycines that differ from peptidesin that the side chain is connected to the amide nitrogen rather thanthe a carbon atom. Peptoids are typically resistant to proteases andother modifying enzymes and can have a much higher cell permeabilitythan peptides (see e.g. Kwon, Y. -U., and Kodadek, T., J. Am. Chem. Soc.(2007) 129, 1508-1509). A suitable antibody may in some embodiments alsobe a multispecific antibody that includes several immunoglobulinfragments.

An immunoglobulin or a proteinaceous binding molecule withimmunoglobulin-like functions may be PEGylated or hyperglycosylated ifdesired. In some embodiments a proteinaceous binding molecule withimmunoglobulin-like functions is a fusion protein of one of theexemplary proteinaceous binding molecules above and an albumin-bindingdomain, for instance an albumin-binding domain of streptococcal proteinG. In some embodiments a proteinaceous binding molecule withimmunoglobulin-like functions is a fusion protein of an immunoglobulinfragment, such as a single-chain diabody, and an immunoglobulin bindingdomain, for instance a bacterial immunoglobulin binding domain. As anillustrative example, a single-chain diabody may be fused to domain B ofstaphylococcal protein A as described by Unverdorben et al. (ProteinEngineering, Design & Selection [2012] 25, 81-88).

According to one aspect of the present disclosure, there is provided amethod of treating or preventing an autoimmune disease which is causedby auto-reactive Th1 and/or Th17 T cells, the method including the stepsof:

-   -   providing a therapeutically effective amount of a composition        including anti-CD6 antibody; and    -   administering said antibody to a subject in need of such        treatment in an amount sufficient to suppress the activation of        T-helper 17 lymphocytes (Th17 T cells) and/or a T-helper 1        lymphocytes (Th1 T cells).

In some embodiments determining the level of expression of the gene ofinterest includes determining the level of transcription into mRNA. RNAencoding the protein of interest in the sample, such as IL-17,IFN-gamma, TNF-alpha, or IL-23R may be amplified using any availableamplification technique, such as polymerase chain reaction (PCR),including multiplex PCR, nested PCR and amplification refractorymutation specific (ARMS) PCR (also called allele-specific PCR (AS-PCR),rolling circle amplification (RCA), nucleic acid sequence basedamplification (NASBA), ligase chain reaction (LCR), QB replicase chainreaction, loop-mediated isothermal amplification (LAMP), transcriptionmediated amplification (TMA) and strand displacement amplification(SDA), including genome strand displacement amplification (WGSDA),multiple strand displacement amplification (MSDA), and gene specificstrand displacement amplification (GS-MSDA). Detection of the obtainedamplification products may be performed in numerous ways known in theart. Examples include, but are not limited to, electrophoretic methodssuch as agarose gel electrophoresis in combination with a staining suchas ethidium bromide staining. In other embodiments the method of theinvention is accompanied by real time detection, such as real time PCR.In these embodiments the time course of the amplification process ismonitored. A means of real time detection commonly used in the artinvolves the addition of a dye before the amplification process. Anexample of such a dye is the fluorescence dye SYBR Green, which emits afluorescence signal only when bound to double-stranded nucleic acids.

Typically a detectable label or marker is used. Such a marker or labelmay be included in a nucleic acid that includes the sequence to beamplified. A marker may also be included in a primer or a probe. It mayalso be incorporated into the amplification product in the course of thereaction. In some embodiments such a marker compound, e.g. included in anucleic acid, is an optically detectable label, a fluorophore, or achromophore. An illustrative example of a marker compound is6-carboxyfluorescein (FAM).

As an illustrative example, real-time PCR may be used to determine thelevel of RNA encoding the protein of interest in the sample, such asIL-17, IFN-gamma, TNF-alpha, or IL-23R. Such a PCR procedure is carriedout under real time detection, so that the time course of theamplification process is monitored. PCR is characterized by alogarithmic amplification of the target sequences. For the amplificationof RNA, a reverse transcriptase-PCR is used. Design of the primers andprobes required to detect expression of a biomarker of the invention iswithin the skill of a practitioner of ordinary skill in the art. In someembodiments RNA from the sample is isolated under RNAse free conditionsand then converted to DNA via the use of a reverse transcriptase.Reverse transcription may be performed prior to RT-PCR analysis orsimultaneously, within a single reaction vessel. RT-PCR probes areoligonucleotides that have a fluorescent moiety, also called reporterdye, attached to the 5′ end and a quencher moiety coupled to the 3′ end(or vice versa). These probes are typically designed to hybridize to aninternal region of a PCR product. In the non-hybridized state, theproximity of the fluor and the quench molecules prevents the detectionof fluorescent signal from the probe. During PCR amplification, when thepolymerase replicates a template on which an RT-PCR probe is bound, the5′-3′ nuclease activity of the polymerase cleaves the probe. Thereby thefluorescent and quenching moieties are decoupled.

Fluorescence increases then in each cycle, in a manner proportional tothe amount of probe cleavage. Fluorescence signal emitted from thereaction can be measured or followed over time using equipment which iscommercially available using routine and conventional techniques.Quantitation of biomarker RNA in a sample being evaluated may beperformed by comparison of the amplification signal to that of one ormore standard curves where known quantities of RNA were evaluated in asimilar manner. In some embodiments, the difference in biomarkerexpression is measured as the difference in PCR cycle time to reach athreshold fluorescence, or “dCT.”

In some embodiments of a method or use disclosed herein an autoimmunedisease is being treated. In certain embodiments of the presentdisclosure, the composition disclosed herein suppresses both a T-helper17 lymphocyte (Th17) mediated immune response and a T-helper 1lymphocyte (Th1) mediated immune response. In certain embodiments, thedisease which is mediated by the auto-reactive T cells is an autoimmunedisease or chronic inflammatory disease.

In certain embodiments of the present disclosure, the autoimmune diseaseis Multiple Sclerosis (MS). In some embodiments the autoimmune diseaseis Rheumatoid Arthritis (RA). In some embodiments the autoimmune diseaseis Inflammatory Bowel Disease (IBD) such as Crohn's disease. Theautoimmune disease may in some embodiments be Ulcerative Colitis. Insome embodiments the autoimmune disease is Type 1 Diabetes. In someembodiments the autoimmune disease is Psoriasis.

The listing or discussion of a previously published document in thisspecification should not necessarily be taken as an acknowledgement thatthe document is part of the state of the art or is common generalknowledge.

The binding partners, compositions, methods and uses illustrativelydescribed herein may suitably be practiced in the absence of any elementor elements, limitation or limitations, not specifically disclosedherein. Additionally, the terms and expressions employed herein havebeen used as terms of description and not of limitation, and there is nointention in the use of such terms and expressions of excluding anyequivalents of the features shown and described or portions thereof, butit is recognized that various modifications are possible. Thus, itshould be understood that although the present binding partners,compositions, methods and uses has been specifically disclosed byexemplary embodiments and optional features, modification and variationof the binding partners, compositions, methods and uses embodied thereinherein disclosed may be resorted to by those skilled in the art, andthat such modifications and variations are considered to be within thescope of the binding partners, compositions, methods and uses disclosed.

The binding partners, compositions, methods and uses have been describedbroadly and generically herein. Each of the narrower species andsubgeneric groupings falling within the generic disclosure also formpart of the binding partners, compositions, methods and uses. Thisincludes the generic description of the binding partners, compositions,methods and uses with a proviso or negative limitation removing anysubject matter from the genus, regardless of whether or not the excisedmaterial is specifically recited herein.

Other embodiments are within the appending claims. In addition, wherefeatures or aspects of the binding partners, compositions, methods anduses are described in terms of Markush groups, those skilled in the artwill recognize that the binding partners, compositions, methods and usesis also thereby described in terms of any individual member or subgroupof members of the Markush group.

In order that the binding partners, compositions, methods and uses maybe readily understood and put into practical effect, particularembodiments will now be described by way of the following non-limitingexamples.

Example 1 Mixed Lymphocyte Reaction and Cytokine Anlaysis

Preparation of PBMCs:

30 ml of blood is collected from a healthy donor. PBMCs are isolated bystandard FICOLL density gradient centrifugation Monocyte Depletion &Setting up Dendritic Cell Derivation Assay: These cells are incubated ina CO2 incubator for two hours. Monocytes are allowed to adhere onto theplastic surface. The non-adhered cells (PBLs) are subsequently removedfrom the flasks. All the flasks are washed with 1×PBS once. 20 ml of DCmedia (made 50 ml stock, 10 μl of GMCSF and 5 μl of IL-4 in 50 ml ofassay media) is added to each flask. The flasks are kept in CO2incubator for 6 days.

LPS Treatment to on-growing Dendritic Cells:

At day 6, DC media with LPS is added to each flask (final concentrationof LPS in the flask is 4 ug/ml) and kept back in CO2 incubator for 40-48hrs.

Preparation of Cells for Mixed Lymphocyte Assay:

Preparation of DCs:

After LPS treatment the cell suspension (DC) are collected from the twoflasks. Each flask is washed with 1×PBS once. The cell suspension isspun down @ 1500 rpm for 5 minutes and reconstituted in 3 ml media. LPStreated DCs are counted and reconstituted in media as per assayrequirement.

Preparation of PBLs:

Following the same protocol as mentioned before, Ficoll separation isperformed after collecting blood from another healthy individual. Aftermonocyte depletion the non adhered cells (PBLs) are collected and spundown @ 1500 rpm for 5 minutes and reconstituted in 5 ml media. PBLs arecounted and reconstituted to 1.0×106 cells/ml.

SEB Treatment to Dendritic Cells:

Preparation of SEB: SEB stock concentration is 1 mg/ml. From the stock 3μl of SEB is dissolved in 3 ml of media to get 1 ug/ml working solutionof SEB. Treatment: As per the standardized protocol 0.06×10⁶ DCs aretreated with 0.6 mg of SEB. A stock 0.1×10⁶ cells/ml (LPS treatedmatured DCs) is made. From this, 600 μl of cell suspension is dissolvedin 2.4 ml of assay media (total volume of cell suspension is 3 ml thatcontains 0.02×10⁶ cells/ml). This is spun down @ 1500 rpm for 5 min and600 μl of SEB (1 ug/ml) is added to the pellet. This is incubated insideCO₂ incubator @ 37° C. for 20 minutes. Excess media (2 ml) is added tothe tube after incubation and washed @ 1500 rpm for 5 min. Supernatantis discarded and the cells are washed again with 3 ml of media. Finallythe pellet is dissolved in 3 ml of assay media.

Mytomycin C Treatment to PBLs:

25 μg/ml mytomycin solution is made from the mytomycin stock of 1 mg/ml.0.5×10⁶ PBLs are treated with 500 μl of 25 μg/ml Mytomycin for 30 mininside CO₂ incubator @ 37° C. Excess media (2 ml) is added to it afterthe incubation and the cells are washed @ 1500 rpm for 5 media.Supernatant is discarded and the cells are washed again with 3 ml ofmedia.

MLR Assay—Inhibition of Proliferation:

MLR assay is performed at DC:PBL=1:50 ratio. Negative control used isNimotuzumab. After 6 days the plate is read with alamar blue.Supernatant from a parallel plate is taken and assayed for cytokinesusing a Th1, Th2 and Th17 CBA human kit (BD biosciences, Pharmingen,USA) is used as per the manufacturer's instruction. Concentration ofcytokines is determined from a standard supplied along with the kit. Allsamples were analysed with a Cyan-ADP, Beckman Coulter, Flow cytometerwith the Summit 4.3 Software.

Results: Significant difference in the key cytokines evaluated isobserved in the presence of Itolizumab as compared to control(Nimotuzumab) treated group. The mean Th17 determining cytokine, IL17 isreduced almost 50%.

Example 2 Induction of EAE and Treatment

Mice were immunized subcutaneously on day 0 with 200 μl of emulsionconsisting of 20 μg of MOG 35-55 in PBS combined with an equal volume ofCFA containing 500 μg heat-killed M. tuberculosis H37Ra. The emulsionwas injected in one of lower dorsum and followed by an intravenousinjection of 100 μl of B. pertussis toxin (0.2 μg/100 μl) in 0.01M PBSthrough lateral tail vein. The booster dose of 100 μl of B. pertussistoxin was given on day 3. Mice were re-immunized on day 7 with 200 μl ofMOG/CFA emulsion injected subcutaneously on the other flank. On day 14mice were randomized and grouped as control and anti CD6 treated mice.Treated group of mice were injected with anti-mouse CD6 MAb(R&DSystem)/10D12 60 ug/100 ul/dose, intraperitoneally on everyalternate day. Control mice were injected with same dose of anti-rat IgGMAb. Mice were observed for symptoms of EAE. Disease severity and onsetin control and treated group was scored as clinical score from day 14 to32 on a 5 point scale as—0, normal; 0.5, stiff tail; 1, limp tail; 1.5,limp tail with inability to right; 2, paralysis of one limb; 2.5paralysis of one limb and weakness of one other limb; 3, completeparalysis of both hind limbs; 4 moribund; 5, death. Mean clinical scorewas calculated by adding the clinical scores for one group and dividingby the total number of mice in that group. The induction of disease inmice was more than 95%.

T Cell Receptor (CD3) Mediated Proliferation Assay

Mice were sacrificed on day 30. Spleen and blood was assessed from eachmouse. Spleens obtained from same group of mice were pooled for in vitroexperiments. Splenocytes (0.2×10⁶ cells/well) obtained from MOGimmunized; control and antiCD6 MAb treated mice were stimulated withprecoated antiCD3 MAb (2.5 μg/ml) in 96 well plates (Nunc). Splenocytesin uncoated wells were used as unstimulated control cells. Cells wereincubated for 3 days. On day 3 alamar blue (30 μl/well; Invitrogen) wasadded. After overnight incubation plates were read at 530/590 nm usingBiotek Synergy plate reader next morning. Data was represented as meanRelative fluorescence unit (RFU) values from unstimulated and stimulatedsplenocytes of both the groups

Cytokine Analysis

For cytokine analysis same set up of proliferation assay was used forstimulation of splenocytes. Briefly, splenocytes (0.2×10⁶ cells/well)obtained from MOG immunized; control and antiCD6 MAb treated mice werestimulated with precoated antiCD3 MAb (2.5 μg/ml) in 96 well plates(Nunc). Splenocytes in uncoated wells were used as unstimulated controlcells. On day 3 supernatants were collected and preserved at −80° C.until cytokine measurement was performed using Cytometeric bead array(CBA) inflammatory cytokine kit (Interleukin-6, Interleukin-10,Interleukin-12p70, Interferon-y, Tumor Necrosis Factor-cc) (BDBiosciences, USA) as per manufacturer's instructions. Briefly, 50 μl ofmixed bead population with discrete fluorescence intensities and coatedwith cytokine specific capture antibodies was added to 50 μl ofsupernatant, and 50 μl of phycoerythrin detection reagent forinflammatory cytokine antibodies. Simultaneously, standards for eachcytokine (0-5000 pg/ml) were likewise mixed with cytokine capture beadsand phycoerythrin detection n reagent. The vortexed mixtures wereallowed to incubate for 2 hrs at room temperature in dark. Beads werewashed and acquired on flow cytometer (CyAnDMADP, Dako). Standard curveswere derived from the cytokine standards supplied with the kit andquantity (pg/ml) of respective cytokine was calculated using standardgraphs.

For detection of Interleukin-17A flex set assay kit (BD Biosciences,USA) was used as per manufacturer's instructions. Briefly, 50 μl ofcapture bead solution coated with IL-17A specific capture antibodies wasadded to 50 μl of supernatant or standard (0-5000 pg/ml) and incubatedfor lhr at room temperature. Beads were washed and incubated with 50 μlof phycoerythrin detection reagent for 1 hr at room temperature. Beadswere washed and acquired on flow cytometer (CyAnDMADP, Dako). Standardcurve was derived from the cytokine standards supplied with the kit andquantity (pg/ml) of IL-17A was calculated using standard graph.

Results: Mice treated with anti-mouse CD6 antibody showed significantclinical improvement over the Rat antibody treated group. Statisticallysignificant difference in the anti mouse CD6 treated group as comparedto the control Rat IgG treated group was observed for the followingcytokines TNFα, IL6, IFNγ and IL17.

Example 3 Method

1. Human PBMC Culture for Th17 Polarization

Human blood was collected from healthy volunteers after signing aninformed consent form and PBMCs (peripheral blood mononuclear cells)were separated by standard density gradient centrifugation over FicollPaque (GE Healthcare Bio-sciences AB, Uppsala, Sweden). PBMCs werecounted and plated in 96 well flat bottom plates, at a density of 0.1million cells per well and stimulated with anti-CD3/anti-CD28 coatedbeads (each antibody coated on beads at a final concentration of 5ng for0.1 million cells per well) under non-polarizing (Thnp) and Th17polarizing conditions (Th17pol). In Th17pol conditions, polarizingcytokines and growth factors were added at a final concentration of:IL-1β 10 ng/mL, IL-6 10 ng/mL, TGF-β 15 ng/mL, IL-23 10 ng/mL, anti-IL-410 μg/mL and anti-IFN-γ 2.5 μg/mL. Itolizumab or irrelevant isotypecontrol antibody (control) were added to cells in both Thnp and Thpolconditions at a final concentration of 40 μg/mL. Cells were cultured ina 37° C. CO₂ incubator for 13 days and sampled at various time points(day 3, day 6, day 8 and day 13) for cytokines, cell-surface andintracellular marker analysis. For cells that were continuouslycultured, 50 μL medium was replaced with RPMI complete medium containing2 ng/mL IL-2 for Thnp condition and 2 ng/mL IL-2 along with 10 ng/mlIL-23 for Th17pol condition on days 6 and 10.

2. Cytokine Analysis

At each time point, 100 μL of cell supernatant was collected and pooledfrom quadruplicate wells and frozen at −80° C. Cytokine analysis wasperformed as per manufacturer instructions using Human IFN-γ QuantikineSixPak (SIF50) and Human IL-17 (IL-17A) (Quantikine SixPak (S1700) kitsfrom R&D Systems. Absorbance was read at 450/630 nm using SpectraMaxM5^(e) reader, Molecular Devices, Sunnyvale, Calif., USA.

3. Flow Cytometry Analysis

Cell surface marker staining: At each time point, cells fromquadruplicate wells were harvested and blocked with Human Fc receptorbinding inhibitor and incubated at 4° C. for 30 minutes. Cells werecentrifuged and re-suspended in staining buffer (2% FBS in 1×PBS)containing the antibodies for cell surface markers (e.g. CD4, CD8, CD25,CD6). Acquisition and analysis of samples were performed using aCyan-ADP flow cytometer with the Summit version 4.3 software (BeckmanCoulter, Fullerton, Calif., USA). Lymphocytes were gated by forward andside scatter and further gated on CD4⁺T cells.

4. Statistical Analyses

GraphPad Prism 6.0 software (GraphPad software, San Diego, Calif., USA)was used for all statistical analysis. Statistical significance wasdetermined using unpaired t test followed by Holm-Sidak method, withalpha=5.000% (FIG. 3B).

Results:

T Cell Activation and CD6 Overexpression in Th17 Polarizing Conditions.

As shown in FIG. 3A, by day 13 the increase in secreted IL-17 levels was3-4 fold higher than the rise in IFN-γ release in cells stimulated inTh17pol conditions (PBMCs stimulated with anti-CD3/anti-CD28 in presenceof Th17 polarizing, Th17pol, cytokines) as compared to Thnp cells (PBMCsstimulated with anti-CD3/anti-CD28, Non-Polarizing condition; Thnp).Absolute concentrations of IL-17 and IFN-γ on day 13 are shown in FIG.3B. IFN-γ released by cells stimulated in Th17pol condition wassignificantly low as compared to the Thnp cells. Similarly these Th17polcells showed a 3-4 fold increase in secreted IL-17 levels as compared toThnp cells. These results indicate that under Th17pol conditions a shifttowards Th17 cells was initiated as early as day 3 with fullestablishment by day 13. There was similar activation of CD4⁺T cells onday 3, as indicated by CD25 (IL-2Rα) over expression in Thnp as well asTh17pol conditions (FIG. 3C).

The surface expression of CD6 receptors on CD4⁺T cells increased after48 hours of stimulation and was sustained till day 12/13, the end of thepolarizing experiment. Representative analysis on day 9, as histogramoverlay for CD6 expression on CD4⁺T cells for one donor is shown in FIG.3D. Biotinylated Itolizumab (anti-human CD6) as a detection reagent,identified CD6 overexpression in 15-30% and 25-35% of CD4⁺T cells inThnp and Th17pol conditions respectively (FIG. 3D). As shown in FIG. 3E(data from 6 different donors), Thnp and Th17pol CD4⁺T cells showedconsistent increase in CD6 MFI over the unstimulated cells. Increase inCD6 expression was also confirmed with the use of commercially availabledomain1 binding anti-CD6 antibodies (MEM98 and MT605 clones FIG. 3E).The increase in CD6 MFI in Th17pol over Thnp cells (FIGS. 3D and E) arein line with the reports from clinical sample derived clones of Th17cells overexpressing CD6 as compared to Th1 cells (Brucklacher-Waldert,Stuerner et al. 2009). This overexpression was not only limited to CD4⁺Tcells but was also observed in activated CD8⁺T cells.

Example 4 Method

1. Human PBMC culture for Th17 polarization: Same as described inExample 3. The experiment was carried out only till day 3 and day 6 inthis particular case.

2. CFSE Labelling and T Cell Proliferation Assay

PBMCs were incubated with CFSE dye at a final concentration of 5 μM,incubated at 37° C., CO₂ incubator for 15 minutes (with intermittentshaking), centrifuged and resuspended in complete medium and againincubated at 37° C., CO₂ incubator for 30 minutes for the stabilization.Cells were washed and stimulated in Thnp and Th17pol conditions withcontrol or Itolizumab antibody. On day 3 post stimulations cells wereanalysed for CFSE dilution on CD4⁺T cells using flow cytometry.

3. Flow Cytometry Analysis

Cell surface marker staining: At each time point, cells fromquadruplicate wells were harvested and blocked with Human Fc receptorbinding inhibitor and incubated at 4° C. for 30 minutes. Cells werecentrifuged and re-suspended in staining buffer (2% FBS in 1×PBS)containing the antibodies for cell surface markers (e.g. CD4, CD8,CD25). Acquisition and analysis of samples were performed using aCyan-ADP flow cytometer with the Summit version 4.3 software (BeckmanCoulter, Fullerton, Calif., USA). Lymphocytes were gated by forward andside scatter and further gated on CD4⁺T cells.

Results:

Itolizumab is associated with inhibition of T cell activation andproliferation in Thnp and Th17pol conditions.

We had previously reported a 50-55% decrease in CD25 expression onanti-CD3 as well as anti-CD3 and ALCAM co-stimulated cells in thepresence of Itolizumab (Nair, Melarkode et al. 2010). Here, we showthat, there is significant reduction in CD25 expression on stimulatedCD4⁺T cells (˜50% reduction) in Thnp and Th17pol conditions in presenceof Itolizumab (FIG. 4A). This would imply that the antibody in variouscontexts of stimulation is able to consistently and similarly inhibitthe activation of T cells.

Similar to inhibition of activation of T cells, we observed thatItolizumab also inhibited the proliferation of T cells. In presence ofItolizumab, a significant reduction in CD4⁺T cell proliferation (˜38% inThnp and 62% reduction in Th17pol condition) was observed (indicated byreduced number of CFSE lo cells) confirming the inhibitory role ofItolizumab in T cell activation and proliferation (FIG. 4B).

Example 5 Method

1. Human PBMC Culture for Th17 Polarization: Same as described inExample 3

2. Flow Cytometry Analysis

Intracellular cytokine staining for IL-17A and IFN-γ was performed asfollows. At the time point of analysis, cells were left unstimulated orstimulated with 50 ng/mL of PMA and 1 μg/mL of ionomycin in presence ofBD Golgi Stop Plug™ and incubated for 5 hours at 37° C. Cells wereharvested and washed in staining buffer and blocked with human Fcreceptor binding inhibitor. After surface marker staining, cells werere-suspended in BD Cytofix/Cytoperm™ fixation/permeabilization buffer,and intracellular staining was performed as per manufacturerinstructions. Acquisition and analysis of samples were performed using aCyan-ADP flow cytometer with the Summit version 4.3 software (BeckmanCoulter, Fullerton, Calif., USA). Lymphocytes were gated by forward andside scatter and further gated on CD3⁺T cells as mentioned in therespective experiments.

3. Cytokine Analysis

At each time point, 100 μl of cell supernatant was collected and pooledfrom quadruplicate wells and frozen at −80° C. Cytokine analysis wasperformed as per manufacturer instructions using Human IFN-γ QuantikineSixPak (SIF50) and Human IL-17 (IL-17A) (Quantikine SixPak (S1700) kitsfrom R&D Systems. Absorbance was read at 450/630 nm using SpectraMaxM5^(e) reader, Molecular Devices, Sunnyvale, Calif., USA.

4. Statistical Analyses

GraphPad Prism 6.0 software (GraphPad software, San Diego, Calif., USA)was used for all statistical analysis. Statistical significance wasdetermined using unpaired t test followed by Holm-Sidak method, withalpha=5.000% (FIGS. 5D and E).

Results:

Itolizumab is Associated with Reduction in Th17 Hallmark Cytokines

Under Th17pol conditions intracellular expression of Th1 (IFN-γ) andTh17 (IL-17A) signature cytokines were compared between control antibodyand Itolizumab treated cells. Representative dot plot from day 6, showonly minimal expression of both IFN-γ and IL-17A upon Itolizumabtreatment, as compared to controls (FIG. 5A). Similar reductions, withItolizumab treatment were also observed in Thnp conditions.

The time course study across days 3, 6, 8 and 13 demonstrated maximumdecrease in intracellular IFN-γ on days 6 and 8(FIG. 5B). Similarly,maximum inhibition (80-90%) of intracellular IL-17A by Itolizumab wasalso observed on these days (FIG. 5C). A corresponding correlation anddecrease in IFN-γ and IL-17 release, upon Itolizumab treatment (asevaluated by measuring secreted cytokines) was also observed (FIGS. 5Dand E). The similar pattern of inhibition for both the intracellularcytokines measured as well as the secreted cytokines confirmed theeffect of Itolizumab in these two major effector Th subsets.

Example 6 Method

1. Human PBMC Culture for Th17 Polarization: Same as described inExample 3

2. Flow Cytometry Analysis

Intracellular staining for pSTAT3 was performed as follows. At the timepoint of analysis cells were harvested and washed in staining buffer andblocked with human Fc receptor binding inhibitor. After surface marker(CD4) staining, cells were fixed with 2% PFA (100 μl for each stainingwell) and incubated at 4° C. for 15-20 mins. Cells were washed with PBS,twice and permeabilised with 100% chilled methanol. 500 μl of chilledmethanol was added while gently vortexing the cells and were incubatedat 4° C. for 20 mins. After centrifugation, at 4° C. at ˜250×g for 5mins methanol was decanted and cells were resuspended in stainingbuffer. Antibodies for intracellular staining were diluted in stainingbuffer and added at appropriate dilutions and plates were incubated at4° C. for 30 minsCells were washed thrice in staining buffer andresuspended in 1×PBS and acquired (all washes done at 4° C.).

Intracellular cytokine staining for IL-17A and transcription factorRORγT was performed as follows. At the time point of analysis, cellswere left unstimulated or stimulated with 50 ng/mL of PMA and 1 μg/mL ofionomycin in presence of BD Golgi Stop Plug™ and incubated for 5 hoursat 37° C. Cells were harvested and washed in staining buffer and blockedwith human Fc receptor binding inhibitor. After surface marker (CD3)staining, cells were re-suspended in BD Cytofix/Cytoperm™fixation/permeabilization buffer, and intracellular staining wasperformed as per manufacturer instructions.

Intracellular cytokine staining for IL-17A and surface marker CCR6 andCD3 was performed as follows. At the time point of analysis, cells wereleft unstimulated or stimulated with 50 ng/mL of PMA and 1 μg/mL ofionomycin in presence of BD Golgi Stop Plug™ and incubated for 5 hoursat 37° C. Cells were harvested and washed in staining buffer and blockedwith human Fc receptor binding inhibitor. After surface marker (CD3 andCCR6) staining, cells were re-suspended in BD Cytofix/Cytoperm™fixation/permeabilization buffer, and intracellular staining wasperformed as per manufacturer instructions

Acquisition and analysis of samples were performed using a Cyan-ADP flowcytometer with the Summit version 4.3 software (Beckman Coulter,Fullerton, Calif., USA). Lymphocytes were gated by forward and sidescatter and further gated on CD4⁺ or CD3⁺T cells as mentioned in therespective panels.

Results:

Reduction in Signature Th17 Specific Markers in Presence of Itolizumab

Th17 differentiation involves the synergistic combination of pSTAT3 andRORyT transcription factors (Annunziato, Cosmi et al. 2007; Bettelli,Korn et al. 2008; de Wit, Souwer et al. 2011). Previously we havereported on Itolizumab mediated reduction in pSTAT3 expression onactivated T cells (Nair, Melarkode et al. 2010) which was furtherconfirmed in the present study (FIG. 6A). We also show, in Th17polconditions there is a substantial reduction in IL-17A and RORγT doublepositive T cells in the presence of Itolizumab as compared to controlantibody treated cells. Correlating with the peak inhibition of effectorcytokines (FIG. 5B-E), the inventors observe a substantial reduction inthese double positive cells (70-80% reduction) and total RORγT MFI onday 6 (FIGS. 6B and 6C respectively). Similar trend was also observed onday 8.

CCR6 is the signature surface marker for Th17 cells (Liu andRohowsky-Kochan 2008; Singh, Zhang et al. 2008). Therefore it was ofinterest to evaluate CCR6 expression in IL-17 producing T cells andeffect of Itolizumab on them. As analysed on day 6, in Th17polconditions, 50-60% reduction in the expression of CCR6⁺IL-17A⁺ (dualpositive) CD3⁺T cells was observed in the presence of Itolizumab ascompared to the control (FIG. 6D). Similar reductions were also observedon day 10.

While CCR6⁺T cells are either memory or Treg cells (Yamazaki, Yang etal. 2008) all these cells are not IL-17 producing Th17 cells (Sallusto,Lenig et al. 1998; Liao, Rabin et al. 1999; Kleinewietfeld, Puentes etal. 2005). Itolizumab had little impact on the IL-17⁻CCR6⁺ (non-Th17cells). This observation is distinct from the decrease observed in totalRORγT MFI in the presence of Itolizumab as compared to the control (FIG.6C), suggesting that Itolizumab could down regulate the expression oftranscription factor RORγT but affects only the IL17⁺ subset of CCR6expression T cells. These experiments prove that Itolizumab inhibits theactivation and differentiation of Th17 cells by inhibiting keytranscription factors pSTAT3, RORγT along with RORγT⁺ IL-17A⁺ andCCR6⁺IL-17⁺ T cells (FIG. 6) across days.

References

Annunziato, F., L. Cosmi, et al. (2007). “Phenotypic and functionalfeatures of human Th17 cells.” J Exp Med 204(8): 1849-61.

Bettelli, E., T. Korn, et al. (2008). “Induction and effector functionsof T(H)17 cells.” Nature 453(7198): 1051-7.

Brucklacher-Waldert, V., K. Stuerner, et al. (2009). “Phenotypical andfunctional characterization of T helper 17 cells in multiple sclerosis.”Brain 132(Pt 12): 3329-41.

De Wit, J., Y. Souwer, et al. (2011). “CD5 costimulation induces stableTh17 development by promoting IL-23R expression and sustained STAT3activation.” Blood 118(23): 6107-14.

Kleinewietfeld, M., F. Puentes, et al. (2005). “CCR6 expression definesregulatory effector/memory-like cells within the CD25(+)CD4+T-cellsubset.” Blood 105(7): 2877-86.

Liao, F., R. L. Rabin, et al. (1999). “CC-chemokine receptor 6 isexpressed on diverse memory subsets of T cells and determinesresponsiveness to macrophage inflammatory protein 3 alpha.” J Immunol162(1): 186-94.

Liu, H. and C. Rohowsky-Kochan (2008). “Regulation of IL-17 in humanCCR6+effector memory T cells.” J Immunol 180(12): 7948-57.

Nair, P., R. Melarkode, et al. (2010). “CD6 synergistic co-stimulationpromoting proinflammatory response is modulated without interfering withthe activated leucocyte cell adhesion molecule interaction.” Clin ExpImmunol 162(1): 116-30.

Sallusto, F., D. Lenig, et al. (1998). “Flexible programs of chemokinereceptor expression on human polarized T helper 1 and 2 lymphocytes.” JExp Med 187(6): 875-83.

Singh, S. P., H. H. Zhang, et al. (2008). “Human T cells that are ableto produce IL-17 express the chemokine receptor CCR6.” J Immunol 180(1):214-21.

Yamazaki, T., X. O. Yang, et al. (2008). “CCR6 regulates the migrationof inflammatory and regulatory T cells.” J Immunol 181(12): 8391-401.

1. A method of treatment for an autoimmune disease in a subject, themethod comprising administering to the subject a binding partner thatspecifically binds to CD6; wherein the subject is known or suspected tohave an increased number of T helper 17 (Th17) cells when compared to ahealthy subject.
 2. The method of claim 1, wherein the subject alsoexhibits and increased number of T helper 1 (Th1) cells when compared toa healthy subject.
 3. The method of claim 1, wherein the autoimmunedisease is one of rheumatoid arthritis, Inflammatory Bowel Disease,Crohn's disease, ulcerative colitis, psoriasis, Sjogren's syndrome andType I diabetes.
 4. The method of claim 1, wherein the binding partneris an antibody or a functional fragment thereof.
 5. The method of claim4, wherein the antibody is one of a fully non-human antibody, a chimericantibody, a humanized antibody and a fully human antibody.
 6. The methodof claim 5, wherein the humanized antibody is Itolizumab.
 7. The methodof claim 5, wherein the functional fragment of an antibody is selectedfrom the group consisting of a Fab-fragment, a single-chain variablefragment (scFv) and a nanobody.
 8. The method of claim 5, wherein theuse includes monitoring IL-23R expression on blood cells and/ordendritic cells of the subject.
 9. The method of claim 1, wherein theuse comprises a reduction of one or more of TNF-alpha, IFN-gamma, IL-17,and IL-17A in a body fluid of the patient.
 10. The method of claim 5,wherein the use comprises a reduction of expression of IL-23R on one ormore of monocytes, T helper cells and natural killer cells in a bodyfluid of the patient.